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SSRLocator


A computing tool with an interface for Windowsusers was developed, called SSR Locator. The application integrates the following functions:

- (i) detection and characterization of SSRs and minisatellite motifs between 1 and 10 base pairs; - (ii) primer design for each locus found;
- (iii) simulation of PCR (polymerase chain reaction), amplifying fragments with different primer pairs from a given set of fasta files;
- (iv) global alignment between amplicons generated by the same primer pair;
- (v) estimation of global alignment scores and identities between amplicons, generating information on primer specificity and redundancy. The described tool is publicly available at the site http://www.ufpel.edu.br/~lmaia.faem.

Download
- Win 32 bits
- - DataBase - Firebird-2.5.2.26540_0_Win32
- - SSRLocator -
- - Sequence.fasta - Sequences.rar

- Win 64 bits
- - DataBase - Firebird-2.5.2.26540_0_x64
- - SSRLocator -
- - Sequence.fasta - Sequences.rar

Instruções:
- Sobre
- Install FareBird DataBase - (pdf)
- Install SSRLocator - (pdf)
- Guia do Usuário - (pdf)

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